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Category "phyloseq"

Extract Alpha Diversity Output into excel or .csv file from phyloseq package

Does anyone know how to extract alpha diversity outputs from the estimate_richness() function from the phyloseq package? I am having a hard time finding the cor

Stacked bar chart with OTUs identified to different taxonomic levels

I have microbiome data with OTUs identified to the lowest taxonomic level possible. Some of the OTUs are identified to genus, others to family, order, etc. I ne

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