'ensembldb and EnsDb.Hsapiens.v86 packages installation error

I'm getting this error message whenever I try to install both packages: ensembldb and EnsDb.Hsapiens.v86 , Below is a screenshot for ensembldb error: installation of package ‘ensembldb’ had non-zero exit status Does anybody know how to solve this issue?

> BiocManager::install("ensembldb")
'getOption("repos")' replaces Bioconductor standard
repositories, see '?repositories' for details

replacement repositories:
    CRAN: https://cran.rstudio.com/

Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.3
  (2022-03-10)
Installing package(s) 'ensembldb'

  There is a binary version available but the source
  version is later:
          binary source needs_compilation
ensembldb 2.18.3 2.18.4             FALSE

installing the source package ‘ensembldb’

trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/ensembldb_2.18.4.tar.gz'
Content type 'application/x-gzip' length 3281012 bytes (3.1 MB)
downloaded 3.1 MB


The downloaded source packages are in
    ‘C:\Users\SN\AppData\Local\Temp\Rtmp6tEIWB\downloaded_packages’
Old packages: 'igraph', 'kernlab', 'magrittr', 'robustbase',
  'RSQLite', 'S4Vectors'
Update all/some/none? [a/s/n]: 
a

  There are binary versions available but the source
  versions are later:
           binary source needs_compilation
igraph     1.2.11  1.3.0              TRUE
kernlab    0.9-29 0.9-30              TRUE
magrittr    2.0.2  2.0.3              TRUE
robustbase 0.93-9 0.95-0              TRUE
RSQLite    2.2.11 2.2.12              TRUE
S4Vectors  0.32.3 0.32.4              TRUE

  Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/igraph_1.2.11.zip'
Content type 'application/zip' length 9012572 bytes (8.6 MB)
downloaded 8.6 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/kernlab_0.9-29.zip'
Content type 'application/zip' length 2847129 bytes (2.7 MB)
downloaded 2.7 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/magrittr_2.0.2.zip'
Content type 'application/zip' length 238534 bytes (232 KB)
downloaded 232 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/robustbase_0.93-9.zip'
Content type 'application/zip' length 3126592 bytes (3.0 MB)
downloaded 3.0 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/RSQLite_2.2.11.zip'
Content type 'application/zip' length 2565712 bytes (2.4 MB)
downloaded 2.4 MB

trying URL 'https://bioconductor.org/packages/3.14/bioc/bin/windows/contrib/4.1/S4Vectors_0.32.3.zip'
Content type 'application/zip' length 2464862 bytes (2.4 MB)
downloaded 2.4 MB

package ‘igraph’ successfully unpacked and MD5 sums checked
package ‘kernlab’ successfully unpacked and MD5 sums checked
package ‘magrittr’ successfully unpacked and MD5 sums checked
package ‘robustbase’ successfully unpacked and MD5 sums checked
package ‘RSQLite’ successfully unpacked and MD5 sums checked
package ‘S4Vectors’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
    C:\Users\SN\AppData\Local\Temp\Rtmp6tEIWB\downloaded_packages
Warning message:
In .inet_warning(msg) :
  installation of package ‘ensembldb’ had non-zero exit status

Sources

This article follows the attribution requirements of Stack Overflow and is licensed under CC BY-SA 3.0.

Source: Stack Overflow

Solution	Source

'ensembldb and EnsDb.Hsapiens.v86 packages installation error

Sources

Related Questions