'How to solve : EnrichR website not responding?
I have faced with working EnrichR, is there any solution to solve it?
install.packages("enrichR")
library(enrichR)
dbs <- listEnrichrDbs()
`EnrichR website not responding`
dbs <- c("GO_Molecular_Function_2015", "GO_Cellular_Component_2015", "GO_Biological_Process_2015" , "ChEA_2016" ,"KEGG_2016")
enriched <- enrichr(c("Runx1", "Gfi1", "Gfi1b", "Spi1", "Gata1", "Kdr"), dbs)
`EnrichR website not responding`
or is there any quick way (not getting one by one) to get whole tables of enrichment from Enrichr?
Many thanks in advance!
Solution 1:[1]
The original @MaayanLab #Enrichr API and server are working fine. #Enrichr was recently slightly modified and that broke that R package. That R package is a wrapper developed independently by @W_Jawaid who recently fixed this issue. Please view this thread: https://github.com/wjawaid/enrichR/issues/21. Version 2.0 and earlier had a bug - version 2.1 available now from Github is working. It should test the website when you load the package. CRAN is on holiday for August, so 2.1 is not there yet.
TL;DR
Version 2.1 available now on GitHub should fix it.
install.packages("devtools")
devtools::install_github("wjawaid/enrichR")
Sources
This article follows the attribution requirements of Stack Overflow and is licensed under CC BY-SA 3.0.
Source: Stack Overflow
| Solution | Source |
|---|---|
| Solution 1 | Rui Barradas |