'BWA not able to locate index files from directory still the commands and steps are correct
I have ran the correct command for indexing and alignment using bwa. I used the bwa-mem alignment. But the command showing error that the index file cannot locate by the system. Please consider about the issue. My command line:
$bwa index -p prefix_Index -a is IRGSP-1.0_genome.fasta
It run correctly.
$bwa mem prefix_index -t 4 trimmed_out/S1_A_trimmed.fastq > bwa_out/S1_A.sam
Output: error massage
[E::bwa_idx_load_from_disk] fail to locate the index files
Sources
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