Category "cytoscape"

System checker fails on MacOS Big Sur with "Java is not reachable"

I'm having trouble running Cytoscape 3.9.1 on MacOS Big Sur. The system checker fails with the following: ############# Cytoscape System Requirements Checker fo

Cytoscape: Error 83, no JRE found Windows 10

We are a biotech company from which some users use Cytoscape. We normally "rollout" or "deploy" software silently with PDQ Deploy. Cytoscape has been working fo

Display Glitch in Cytoscape

I have installed the latest version of Java as well as Cytoscape. Whenever I open Cytoscape, there seems to be a display bug or glitch after around 2-3 minutes

How do I configure graph to show downward pointing edges without hardcoding node positions?

I am trying to achieve this effect using cytoscape.js and the cytoscope-cola.js extension. I want to make the edges of my graph direct downwards like in this pi

How to split a string of author names by comma into a data frame and generate an edgelist to plot a network?

I have a long list of publications saved as a single column in a data frame. I'd like to generate a network of a short subset of co-authors that have contribute