Category "fasta"

Split a fasta file into desired nucelotide length but in a sliding window format

Stuck at a R problem. I have a random fasta file: > header AGTCAGTCAGTC My desired output is: segment1 AGTC segment2 GTCA segment3 TCAG segment4 CA

Finding motifs and position of motif in FASTA file - Perl

Can someone help me with this Perl code? When I run it, nothing happens. No errors or anything which is weird to me. It reads in and opens the file just fine. I

Sliding window algorithm to analyze values of fasta segments

I have two segments of a random fasta file 1 Segment1 AAGGTTCC 2 Segment2 CCTTGGAA I have another random data set containing dinucleotides' energy values as A

Convert FASTA to GenBank

Is there a way to use BioPython to convert FASTA files to a Genbank format? There are many answers on how to convert from Genbank to FASTA, but not the other wa