StackExchange. I'm trying to build a phylogenetic tree for >100 individuals, using R. However, while tutorials for packages like APE and ggtree readily show
A phylo object in R can have internal node labels (phylo_obj$node.label), but many R functions use node numbers instead of the node labels. Even the phylo objec
I am trying to to include my results of ancestral state estimation as pie charts at the nodes of a phylogenetic tree. It works fine for rectangular trees but I